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J. J. Armesto and E. R. Fuentes, “Tree species regeneration in a mid-elevation, temperate rain forest in Isla de Chiloe, Chile”, Vegetatio, vol. 74, p. 151-159, 1988.
J. J. Armesto, J. Díaz-Forestier, C. Tejo-Haristory, and J. L. Celis-Diez, Botánica Ecológica. Guía de Campo de la Flora Leñosa de Chiloé. Santiago, Chile: , 2011, p. 162.
J. J. Armesto, et al., “Fire disturbance regimes, ecosystem recovery and restoration strategies in Mediterranean and temperate regions of Chile”, in A. Cerda and P. Robichaud (eds.). Fire effects on soils and restoration strategies, 2008, p. 537-567.
J. J. Armesto, J. F. Franklin, M. T. K. Arroyo, and C. Smith-Ramirez, “El sistema de cosecha con "retención variable": una alternativa de manejo para conciliar los objetivos de conservación y producción en los bosques nativos chilenos”, in C. Donoso and A. Lara (eds.). Silvicultura de los bosques nativos de Chile, 1999, p. 69-94.
J. J. Armesto, C. Papic, and P. Pliscoff, “Relevancia de las pequeñas áreas silvestres para la conservación de la biodiversidad en el bosque nativo”, Ambiente y Desarrollo, vol. 18, p. 60-70, 2002.
J. J. Armesto, “Impacto potencial del proyecto Cascada Chile sobre los ecosistemas forestales de la X Región y su diversidad biológica. (On the potential impact of Cascada Project on the forest ecosystems of the Lake District and their biological diversity)”, Ambiente y Desarrollo, vol. 15, p. 13-17, 1999.
J. J. Armesto, “Long-term studies: a research priority for today's ecology”, Rev. Chil. Hist. Nat., vol. 63, p. 7-9, 1990.
J. J. Armesto, M. C. Nuñez-Avila, P. Donoso, and R. Rozzi, “Avances de una red de sitios de estudios ecológicos a largo plazo en el suroeste de Sudamérica”, Bosque (Valdivia), vol. 35, no. 3, p. 413 - 414, 2014.
J. J. Armesto, G. P. Cheplick, and M. J. McDonnell, “Observations on the reproductive biology of Phytolacca americana L. (Phytolaccaceae)”, Bull. Torrey Bot. Club, vol. 10, p. 380-383, 1983.
J. J. Armesto, R. Rozzi, and S. T. A. Pickett, “Ecology: VI Patch Dynamics”, in “Encyclopedia of Environmental Ethics and Philosophy,” (eds.) B. Callicott and R. Frodeman, Volume 1, 2008, p. 259-262.
J. J. Armesto, R. Rozzi, and J. P. Caspersen, “Temperate forests of North and South America”, in F. S. Chapin, O. E. Sala, and E. Huber-Sannwald (eds.). Global Biodiversity in a Changing Environment Scenarios for the 21st Century, 2001, p. 223-249.
J. J. Armesto, et al., “From the Holocene to the Anthropocene: A historical framework for land cover change in southwestern South America in the past 15,000 years”, Land Use Policy, vol. 27, p. 148-160, 2009.
J. J. Armesto, I. A. Díaz, C. Papic, and M. F. Willson, “Seed rain of fleshy and dry propagates to different habitats in temperate rainforests of Chiloe, Chile”, Austral Ecol., vol. 26, p. 311-320, 2001.
J. J. Armesto and S. T. A. Pickett, “Foreword”, Rev. Chil. Hist. Nat., vol. 64, p. 389, 1991.
J. J. Armesto, “Diagnóstico del monitoreo de la biodiversidad terrestre de Chile en el contexto del cambio climático”. 2015.
J. J. Armesto and S. T. A. Pickett, “Removal experiments to test mechanisms of plant succession in oldfields”, Vegetatio, vol. 66, p. 85-93, 1986.
J. J. Armesto, et al., “Old-growth temperate rainforests of South America: Conservation, plant–animal interactions, and baseline biogeochemical processes.”, in C. Wirth et al., eds. Old-growth Forests, 2009, p. 367-390.
J. J. Armesto, M. T. K. Arroyo, and L. F. Hinojosa, “The Mediterranean environment”, in T. T. Veblen, A. Orme, and K. Young (eds.). The Physical Geography of South America, 2007, p. 184-199.
J. J. Armesto, S. T. A. Pickett, and M. J. McDonnell, “Spatial heterogeneity during succession: a cyclic model of invasion and exclusion”, in J. Kolasa and S. T. A. Pickett (eds.). Ecological Heterogeneity, 1991, p. 256-269.
J. J. Armesto, C. Smith-Ramirez, and R. Rozzi, “Conservation strategies for biodiversity and indigenous people in Chilean forest ecosystems”, J. Royal Society New Zealand, vol. 31, p. 865-877, 2001.
J. J. Armesto, R. Rozzi, C. Smith-Ramirez, and M. T. K. Arroyo, “Conservation targets in South American temperate forests”, Science, vol. 282, p. 1271-1272, 1998.

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